What is your proposed way of doing things then, just never think about anything at all? What about those people who wondered if the earth is flat? Doesn't it always start with a theory, that people then try to disprove or validate?

Also I don't understand why you think there is no empirical evidence? There is a lot of empirical evidence, namely, there are billions of people to observe, as well as lots and lots of animals.

So people create models that they think explain things - then they can compare those models to reality. That they are not perfect does not make them 100% wrong (is Newtonian physics wrong? Kind of, but would you say it is stupid? At least it lead the way in the right direction).

OK, trying agin: "We have absolutely no way of ever empirically confirming what the real picture on the box is, yet we continue to find and force only the pieces that fit our conjectured "picture on the box"."

What do you mean by that? If you have an observation that contradicts the theory exposed in the article, then publish it, and the theory will have to be amended/discarded/whatever. Before you chuckle, present the observation/evidence.